PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 902758
Common NameARALYDRAFT_482627
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 329aa    MW: 34945.3 Da    PI: 4.9248
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
902758genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00069267287323
              ETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
              C+ Cg + ++k++L rH+ +H
   902758 267 CTSCGVRLKQKEELDRHMELH 287
              ******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.868265292IPR007087Zinc finger, C2H2
PROSITE patternPS000280267287IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MLEEDDSVRI PSSSSQFKNT NMRELPDASQ VEIFDSKLAA ENAPGLTIAS EATGQPNMSD  60
LLEAVMKSGI LSNNSTHGAI KEEISQDEVN PGALTLSAAS KPKNLPSALP ISLAGDNLLA  120
RLKVEQSSAP LVSCAASLTG ITSVQTSKEN SKASDPLSCL LSSLVSKGLI SASKTEQPSA  180
PSITQEYSPD HSTNSSMSVS VVPSDAQPSV LVKKGPSTAP KVKGLTASET SKSEPEDLIG  240
LKFRADKIRE LHPSVISSLF DDLPHLCTSC GVRLKQKEEL DRHMELHDKS KGELSGKNSK  300
CRVWFPKVEN WIAAKAGELE PEDEEVLN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069190.0AC006919.6 Arabidopsis thaliana chromosome 2 clone F1O11 map g6825, complete sequence.
GenBankAK2267570.0AK226757.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-77-O21.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881447.10.0zinc finger (C2H2-type) family protein
TrEMBLD7LJ420.0D7LJ42_ARALL; Zinc finger (C2H2-type) family protein
STRINGscaffold_402259.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM642333